Institute of Aquaculture

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Outputs related to Institute of Aquaculture

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Article

Synergies of co-infecting pathogens, sea lice (Lepeophetheirus salmonis) and Moritella viscosa, are impacted by exposure order, and host response to initial infection

Cai W, Zhong L, Parrish K, Kumar S, Eslamloo K, Fajei E, Whyte SK, Purcell SL, Jahangiri L, Li R, Solares AC, Taylor RG, Balder R, Rise ML & Fast MD (2024) Synergies of co-infecting pathogens, sea lice (Lepeophetheirus salmonis) and Moritella viscosa, are impacted by exposure order, and host response to initial infection. Aquaculture, 591, Art. No.: 741115. https://doi.org/10.1016/j.aquaculture.2024.741115

Article

Characterization of the impact of dietary immunostimulant CpG on the expression of mRNA biomarkers involved in the immune responses in Atlantic salmon (Salmo salar)

Xue X, Eslamloo K, Caballero-Solares A, Katan T, Umasuthan N, Taylor RG, Fast MD, Andreassen R & Rise ML (2024) Characterization of the impact of dietary immunostimulant CpG on the expression of mRNA biomarkers involved in the immune responses in Atlantic salmon (Salmo salar). Fish & Shellfish Immunology, 153, Art. No.: 109840. https://doi.org/10.1016/j.fsi.2024.109840

Article

An aquaculture risk model to understand the causes and consequences of Atlantic Salmon mass mortality events: A review

Sajid Z, Gamperl AK, Parrish CC, Colombo SM, Santander J, Mather C, Neis B, Holmen IM, Filgueira R, McKenzie CH, Cavalli LS, Jeebhay M, Gao W, López Gómez MA & Caballero‐Solares A (2024) An aquaculture risk model to understand the causes and consequences of Atlantic Salmon mass mortality events: A review. Reviews in Aquaculture, 16 (4), pp. 1674-1695. https://doi.org/10.1111/raq.12917

Article

Transcriptomic response of lumpfish (Cyclopterus lumpus) head kidney to viral mimic, with a focus on the interferon regulatory factor family

Emam M, Kumar S, Eslamloo K, Caballero-Solares A, Hall JR, Xue X, Paradis H, Gendron RL, Santander J & Rise ML (2024) Transcriptomic response of lumpfish (Cyclopterus lumpus) head kidney to viral mimic, with a focus on the interferon regulatory factor family. Frontiers in Immunology, 15. https://doi.org/10.3389/fimmu.2024.1439465

Article

Studying interactions among anthropogenic stressors in freshwater ecosystems: A systematic review of 2396 multiple‐stressor experiments

Orr JA, Macaulay SJ, Mordente A, Burgess B, Albini D, Hunn JG, Restrepo‐Sulez K, Wilson R, Schechner A, Robertson AM, Lee B, Stuparyk BR, Singh D, O'Loughlin I & Juvigny‐Khenafou NPD (2024) Studying interactions among anthropogenic stressors in freshwater ecosystems: A systematic review of 2396 multiple‐stressor experiments. Ecology Letters, 27 (6), Art. No.: e14463. https://doi.org/10.1111/ele.14463

Edited Book

Aquatic Food Security

Crumllish M & Norman R (eds.) (2024) Aquatic Food Security. 5M books. https://5mbooks.com/product/aquatic-food-security

Article

Interacting Effects of Sea Louse (Lepeophtheirus salmonis) Infection and Formalin-Killed Aeromonas salmonicida on Atlantic Salmon Skin Transcriptome

Caballero-Solares A, Umasuthan N, Xue X, Katan T, Kumar S, Westcott JD, Chen Z, Fast MD, Skugor S, Taylor RG & Rise ML (2024) Interacting Effects of Sea Louse (Lepeophtheirus salmonis) Infection and Formalin-Killed Aeromonas salmonicida on Atlantic Salmon Skin Transcriptome. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.804987

Article

Cell atlas of the Atlantic salmon spleen reveals immune cell heterogeneity and cell-specific responses to bacterial infection

Sun J, Ruiz Daniels R, Balic A, Andresen AM, Bjørgen H, Dobie R, Henderson NC, Koppang EO, Martin SA, Fosse JH, Taylor RS & Macqueen DJ (2024) Cell atlas of the Atlantic salmon spleen reveals immune cell heterogeneity and cell-specific responses to bacterial infection. Fish & Shellfish Immunology, 145, Art. No.: 109358. https://doi.org/10.1016/j.fsi.2024.109358

Article

Effects of flow reduction and artificial light at night (ALAN) on litter decomposition and invertebrate communities in streams: A flume experiment

Juvigny-Khenafou NPD, Burgazzi G, Steiner N, Harvey E, Terui A, Piggott J, Manfrin A, Feckler A, Leese F & Schäfer RB (2024) Effects of flow reduction and artificial light at night (ALAN) on litter decomposition and invertebrate communities in streams: A flume experiment. Science of The Total Environment, 912, Art. No.: 168836. https://doi.org/10.1016/j.scitotenv.2023.168836

Article

Dietary LC-PUFA and environmental salinity modulate the fatty acid biosynthesis capacity of the euryhaline teleost thicklip grey mullet (Chelon labrosus)

Marrero M, Monroig O, Perez JA, Betancor M, Galindo A, Bolanos A, Acosta NG & Rodriguez C (2024) Dietary LC-PUFA and environmental salinity modulate the fatty acid biosynthesis capacity of the euryhaline teleost thicklip grey mullet (Chelon labrosus). Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, 269, Art. No.: 110865. https://doi.org/10.1016/j.cbpb.2023.110865

Article

Interactive effects of multiple stressors with significant wave height exposure on farmed Atlantic salmon (Salmo salar) welfare along an inshore-offshore gradient

Szewczyk TM, Morro B, Díaz-Gil C, Gillibrand PA, Hardwick JP, Davidson K, Aleynik D & Planellas SR (2024) Interactive effects of multiple stressors with significant wave height exposure on farmed Atlantic salmon (Salmo salar) welfare along an inshore-offshore gradient. Rey Planellas S (Project Leader) Aquaculture, 579, Art. No.: 740184. https://doi.org/10.1016/j.aquaculture.2023.740184

Book Chapter

Horizon Scanning For Aquatic Food Security

Norman R & Crumlish M (2024) Horizon Scanning For Aquatic Food Security. In: Crumlish M & Norman R (eds.) Aquatic Food Security. 5m books, p. Essex. https://5mbooks.com/product/aquatic-food-security

Book Chapter

Introduction To Global Aquatic Food Security

Norman R & Crumlish M (2024) Introduction To Global Aquatic Food Security. In: Crumlish M & Norman R (eds.) Aquatic Food Security. 1 ed. Essex: 5M publishing. https://5mbooks.com/product/aquatic-food-security

Review

A gap analysis on modelling of sea lice infection pressure from salmonid farms: (I) A structured knowledge review

Moriarty M, Murphy JM, Brooker AJ, Waites W, Revie CW, Adams TP, Lewis M, Reinardy HC, Phelan JP, Coyle JP, Rabe B, Ives SC, Armstrong JD, Sandvik AD & Asplin L (2024) A gap analysis on modelling of sea lice infection pressure from salmonid farms: (I) A structured knowledge review. Aquaculture Environment Interactions, 16, pp. 1-25. https://doi.org/10.3354/aei00469

Review

A gap analysis on modelling of sea lice infection pressure from salmonid farms: (II) Identifying and ranking knowledge gaps: output of an international workshop

Murphy JM, Moriarty M, Brooker AJ, Waites W, Revie C, Adams TP, Lewis M, Reinardy HC, Phelan JP, Coyle JP, Rabe B, Ives SC, Armstrong JD, Sandvik AD & Asplin L (2024) A gap analysis on modelling of sea lice infection pressure from salmonid farms: (II) Identifying and ranking knowledge gaps: output of an international workshop [Sea lice gap analysis]. Aquaculture Environment Interactions, 16, pp. 27-42. https://doi.org/10.3354/aei00471

Article

Factors affecting the micronutrient status of adolescent girls living in complex agro-aquatic ecological zones of Bangladesh

Ara G, Little DC, Mamun A, De Roos B, Grieve E, Khanam M, Hasan SMT, Ireen S, Dilruba S, Bushra Boitchi A, Dijkhuizen MA, Ahmed T & Roos N (2023) Factors affecting the micronutrient status of adolescent girls living in complex agro-aquatic ecological zones of Bangladesh. Scientific Reports, 13, Art. No.: 6631. https://doi.org/10.1038/s41598-023-33636-8

Article

Development of an Accurate Polymerase Chain Reaction (PCR) Assay for Genetic Sex Identification in Lumpfish (Cyclopterus lumpus) Based on Male-Specific Anti-Mullerian Hormone (amh) Gene

Chaiyasut K, Merviel P, Palma P, Gutierrez AP, Perschthaler J, Jimenez-Fernandez E & Davie A (2023) Development of an Accurate Polymerase Chain Reaction (PCR) Assay for Genetic Sex Identification in Lumpfish (Cyclopterus lumpus) Based on Male-Specific Anti-Mullerian Hormone (amh) Gene. Fishes, 8 (6), Art. No.: 327. https://doi.org/10.3390/fishes8060327

Article

Impacts of various single and mixed colors of monochromatic LED light on growth, behavior, immune-physiological parameters, and liver and brain histology of Nile tilapia fingerlings

Elkadom EM, Abd El-Kader MF, Bakr BA, Abozeid AM & Mohamed RA (2023) Impacts of various single and mixed colors of monochromatic LED light on growth, behavior, immune-physiological parameters, and liver and brain histology of Nile tilapia fingerlings. Aquaculture, 577, Art. No.: 740007. https://doi.org/10.1016/j.aquaculture.2023.740007

Project Report

Research and Evaluation Of the Social, Economic, and Operational Implications of the Outer Hebrides Creel Limitation Pilot

Wilson F, Mendo T & James M (2023) Research and Evaluation Of the Social, Economic, and Operational Implications of the Outer Hebrides Creel Limitation Pilot. Marine Scotland. https://www.gov.scot/publications/research-evaluation-social-economic-operational-implications-outer-hebrides-creel-limitation-pilot/documents/: Marine Scotland. https://www.gov.scot/publications/research-evaluation-social-economic-operational-implications-outer-hebrides-creel-limitation-pilot/documents/

Article

A versatile nuclei extraction protocol for single nucleus sequencing in non-model species–Optimization in various Atlantic salmon tissues

Ruiz Daniels R, Taylor RS, Dobie R, Salisbury S, Furniss JJ, Clark E, Macqueen DJ & Robledo D (2023) A versatile nuclei extraction protocol for single nucleus sequencing in non-model species–Optimization in various Atlantic salmon tissues. Winter S (Editor) PLOS ONE, 18 (9), Art. No.: e0285020. https://doi.org/10.1371/journal.pone.0285020